Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
trmt11tRNA methyltransferase 11 homolog. (526 aa)    
Predicted Functional Partners:
trmt112
tRNA methyltransferase subunit 11-2.
   
 0.988
dus1l
Dihydrouridine synthase 1 like.
  
  
 0.932
LOC115018804
Methyltransferase N6AMT1-like.
    
 
 0.912
LOC115018619
Methyltransferase N6AMT1-like.
    
 
 0.912
mettl1
Methyltransferase like 1.
   
 0.902
wdr12
WD repeat domain 12.
   
   0.868
trmt61a
tRNA methyltransferase 61A.
   
 
 0.866
trmt6
tRNA methyltransferase 6.
   
 0.865
wdr4
WD repeat domain 4.
   
 
 0.862
trmt12
tRNA methyltransferase 12 homolog.
   
  
 0.848
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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