Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nom1Nucleolar protein with MIF4G domain 1. (480 aa)    
Predicted Functional Partners:
esf1
ESF1 nucleolar pre-rRNA processing protein homolog.
   
 
 0.987
wdr3
WD repeat domain 3.
   
 
 0.986
ngdn
Neuroguidin.
   
 
 0.982
ddx10
DEAD-box helicase 10.
   
 
 0.981
utp6
UTP6 small subunit processome component.
   
 
 0.974
bysl
Bystin like.
   
 
 0.972
nat10
N-acetyltransferase 10.
   
   0.971
utp4
UTP4 small subunit processome component.
   
   0.968
utp3
UTP3 small subunit processome component.
   
 
 0.967
noc4l
Nucleolar complex associated 4 homolog.
   
   0.967
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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