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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nom1Nucleolar protein with MIF4G domain 1. (480 aa)    
Predicted Functional Partners:
ddx10
DEAD-box helicase 10.
   
 
 0.993
wdr3
WD repeat domain 3.
   
   0.992
ngdn
Neuroguidin.
   
   0.990
nat10
N-acetyltransferase 10.
   
 
 0.989
esf1
ESF1 nucleolar pre-rRNA processing protein homolog.
   
   0.988
noc4l
Nucleolar complex associated 4 homolog.
   
   0.987
eif4a3
Eukaryotic translation initiation factor 4A3.
   
 
 0.987
utp3
UTP3 small subunit processome component.
   
 
 0.985
rrp9
Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.
   
   0.981
utp6
UTP6 small subunit processome component.
   
   0.981
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.