Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115014291Ankyrin repeat and KH domain-containing protein 1-like. (2624 aa)    
Predicted Functional Partners:
bap1
BRCA1 associated protein 1.
    
   0.873
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
    0.730
cog3
Component of oligomeric golgi complex 3.
   
    0.730
nipbl
NIPBL cohesin loading factor.
   
    0.705
LOC115016829
nipped-B-like protein.
   
    0.705
ENSCGOP00000005218
annotation not available
   
    0.698
ENSCGOP00000046429
annotation not available
   
    0.698
LOC115027236
Uncharacterized LOC115027236.
   
    0.698
nrros
Negative regulator of reactive oxygen species.
      
 0.688
pds5a
PDS5 cohesin associated factor A.
   
    0.686
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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