LOC115009872 protein (Cottoperca gobio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC115009872

Vesicular glutamate transporter 3. (586 aa)

Predicted Functional Partners:

RIMS2

0.721

slc26a5

0.672

ENSCGOP00000010750

0.664

ENSCGOP00000010759

0.664

LOC115028991

0.651

LOC115027156

0.651

syt1

0.643

LOC115010481

0.639

LOC115008409

0.639

piezo1

0.631

Your Current Organism:

Cottoperca gobio

NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCGOP00000010750	ENSCGOP00000010759	ENSCGOP00000010750	ENSCGOP00000010759	annotation not available	annotation not available	0.948
ENSCGOP00000010750	LOC115008409	ENSCGOP00000010750	ENSCGOP00000001622	annotation not available	Synaptotagmin-2-like.	0.525
ENSCGOP00000010750	LOC115009872	ENSCGOP00000010750	ENSCGOP00000007253	annotation not available	Vesicular glutamate transporter 3.	0.664
ENSCGOP00000010750	LOC115010481	ENSCGOP00000010750	ENSCGOP00000000981	annotation not available	Synaptotagmin-2-like.	0.525
ENSCGOP00000010750	RIMS2	ENSCGOP00000010750	ENSCGOP00000029120	annotation not available	Regulating synaptic membrane exocytosis 2.	0.672
ENSCGOP00000010750	syt1	ENSCGOP00000010750	ENSCGOP00000011787	annotation not available	Synaptotagmin 1.	0.525
ENSCGOP00000010759	ENSCGOP00000010750	ENSCGOP00000010759	ENSCGOP00000010750	annotation not available	annotation not available	0.948
ENSCGOP00000010759	LOC115008409	ENSCGOP00000010759	ENSCGOP00000001622	annotation not available	Synaptotagmin-2-like.	0.514
ENSCGOP00000010759	LOC115009872	ENSCGOP00000010759	ENSCGOP00000007253	annotation not available	Vesicular glutamate transporter 3.	0.664
ENSCGOP00000010759	LOC115010481	ENSCGOP00000010759	ENSCGOP00000000981	annotation not available	Synaptotagmin-2-like.	0.514
ENSCGOP00000010759	RIMS2	ENSCGOP00000010759	ENSCGOP00000029120	annotation not available	Regulating synaptic membrane exocytosis 2.	0.672
ENSCGOP00000010759	syt1	ENSCGOP00000010759	ENSCGOP00000011787	annotation not available	Synaptotagmin 1.	0.514
LOC115008409	ENSCGOP00000010750	ENSCGOP00000001622	ENSCGOP00000010750	Synaptotagmin-2-like.	annotation not available	0.525
LOC115008409	ENSCGOP00000010759	ENSCGOP00000001622	ENSCGOP00000010759	Synaptotagmin-2-like.	annotation not available	0.514
LOC115008409	LOC115009872	ENSCGOP00000001622	ENSCGOP00000007253	Synaptotagmin-2-like.	Vesicular glutamate transporter 3.	0.639
LOC115008409	RIMS2	ENSCGOP00000001622	ENSCGOP00000029120	Synaptotagmin-2-like.	Regulating synaptic membrane exocytosis 2.	0.525
LOC115009872	ENSCGOP00000010750	ENSCGOP00000007253	ENSCGOP00000010750	Vesicular glutamate transporter 3.	annotation not available	0.664
LOC115009872	ENSCGOP00000010759	ENSCGOP00000007253	ENSCGOP00000010759	Vesicular glutamate transporter 3.	annotation not available	0.664
LOC115009872	LOC115008409	ENSCGOP00000007253	ENSCGOP00000001622	Vesicular glutamate transporter 3.	Synaptotagmin-2-like.	0.639
LOC115009872	LOC115010481	ENSCGOP00000007253	ENSCGOP00000000981	Vesicular glutamate transporter 3.	Synaptotagmin-2-like.	0.639