rfx5 protein (Cottoperca gobio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Gene fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

rfx5

Regulatory factor X5. (500 aa)

Predicted Functional Partners:

rfxank

0.996

rfxap

0.995

ENSCGOP00000037238

0.994

ENSCGOP00000007463

0.857

ankra2

0.836

ENSCGOP00000019554

0.802

med23

0.748

ehf

0.726

cryzl1

0.676

cstf2

0.668

Your Current Organism:

Cottoperca gobio

NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCGOP00000007463	rfx5	ENSCGOP00000007463	ENSCGOP00000007464	annotation not available	Regulatory factor X5.	0.857
ENSCGOP00000007463	rfxank	ENSCGOP00000007463	ENSCGOP00000024603	annotation not available	Regulatory factor X associated ankyrin containing protein.	0.596
ENSCGOP00000007463	rfxap	ENSCGOP00000007463	ENSCGOP00000048799	annotation not available	Regulatory factor X associated protein.	0.673
ENSCGOP00000019554	ENSCGOP00000037238	ENSCGOP00000019554	ENSCGOP00000037238	annotation not available	annotation not available	0.814
ENSCGOP00000019554	rfx5	ENSCGOP00000019554	ENSCGOP00000007464	annotation not available	Regulatory factor X5.	0.802
ENSCGOP00000019554	rfxank	ENSCGOP00000019554	ENSCGOP00000024603	annotation not available	Regulatory factor X associated ankyrin containing protein.	0.609
ENSCGOP00000019554	rfxap	ENSCGOP00000019554	ENSCGOP00000048799	annotation not available	Regulatory factor X associated protein.	0.502
ENSCGOP00000037238	ENSCGOP00000019554	ENSCGOP00000037238	ENSCGOP00000019554	annotation not available	annotation not available	0.814
ENSCGOP00000037238	ankra2	ENSCGOP00000037238	ENSCGOP00000008047	annotation not available	Ankyrin repeat family A member 2.	0.440
ENSCGOP00000037238	rfx5	ENSCGOP00000037238	ENSCGOP00000007464	annotation not available	Regulatory factor X5.	0.994
ENSCGOP00000037238	rfxank	ENSCGOP00000037238	ENSCGOP00000024603	annotation not available	Regulatory factor X associated ankyrin containing protein.	0.967
ENSCGOP00000037238	rfxap	ENSCGOP00000037238	ENSCGOP00000048799	annotation not available	Regulatory factor X associated protein.	0.827
ankra2	ENSCGOP00000037238	ENSCGOP00000008047	ENSCGOP00000037238	Ankyrin repeat family A member 2.	annotation not available	0.440
ankra2	rfx5	ENSCGOP00000008047	ENSCGOP00000007464	Ankyrin repeat family A member 2.	Regulatory factor X5.	0.836
ankra2	rfxap	ENSCGOP00000008047	ENSCGOP00000048799	Ankyrin repeat family A member 2.	Regulatory factor X associated protein.	0.922
cryzl1	rfx5	ENSCGOP00000049927	ENSCGOP00000007464	Crystallin zeta like 1.	Regulatory factor X5.	0.676
cstf2	rfx5	ENSCGOP00000041200	ENSCGOP00000007464	Cleavage stimulation factor subunit 2.	Regulatory factor X5.	0.668
ehf	med23	ENSCGOP00000042369	ENSCGOP00000035325	ETS homologous factor.	Mediator complex subunit 23.	0.748
ehf	rfx5	ENSCGOP00000042369	ENSCGOP00000007464	ETS homologous factor.	Regulatory factor X5.	0.726
ehf	rfxank	ENSCGOP00000042369	ENSCGOP00000024603	ETS homologous factor.	Regulatory factor X associated ankyrin containing protein.	0.543