Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
LOC115011784Trinucleotide repeat-containing gene 6C protein-like. (1670 aa)    
Predicted Functional Partners:
LOC115005641
PAN2-PAN3 deadenylation complex catalytic subunit PAN2-like.
    
 
 0.908
cnot1
CCR4-NOT transcription complex subunit 1.
   
 
 0.900
pan3
poly(A) specific ribonuclease subunit PAN3.
   
 
 0.894
LOC115015508
Protein argonaute-4.
    
 0.866
LOC115015305
Protein argonaute-2.
    
 0.866
LOC115020888
Protein argonaute-1.
    
 0.866
LOC115020886
Protein argonaute-3.
    
 0.866
LOC115015437
Protein argonaute-3-like.
    
 0.866
cnot10
CCR4-NOT transcription complex subunit 10.
    
 
 0.838
cnot2
CCR4-NOT transcription complex subunit 2.
    
 
 0.836
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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