STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nkx3-1NK3 homeobox 1. (189 aa)    
Predicted Functional Partners:
LOC115017525
RAC-beta serine/threonine-protein kinase.
     
 0.790
LOC115018604
RAC-beta serine/threonine-protein kinase-like.
     
 0.790
LOC115019820
RAC-gamma serine/threonine-protein kinase.
     
 0.790
ar
Androgen receptor.
    
 
 0.553
LOC115014359
Androgen receptor-like.
    
 
 0.553
SPDEF
SAM pointed domain-containing Ets transcription factor-like.
    
 
 0.517
SPDEF-2
SAM pointed domain-containing Ets transcription factor-like.
    
 
 0.517
gata3
GATA binding protein 3.
    
 0.460
rnf25
Ring finger protein 25.
      
 0.446
LOC115008926
GATA-binding factor 2-like.
    
 0.443
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.