Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115016845Cryptic protein-like. (205 aa)    
Predicted Functional Partners:
gdf3
Growth differentiation factor 3.
    
 0.828
LOC115025626
Forkhead box protein H1-like.
   
 0.813
LOC115003740
Left-right determination factor 2-like.
    
 0.803
LOC115013701
Nodal homolog.
    
 0.802
rrp7a
Ribosomal RNA processing 7 homolog A.
    
 
 0.790
smpd4
Sphingomyelin phosphodiesterase 4.
      
 0.772
ddx11
DEAD/H-box helicase 11.
    
 
 0.752
nodal
Nodal growth differentiation factor.
    
 0.703
acvr2b
Activin A receptor type 2B.
    
 0.685
LOC115025624
Transcription factor Sox-17-alpha-like.
    
 
 0.682
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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