Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
limd2LIM domain containing 2. (113 aa)    
Predicted Functional Partners:
med14
Mediator complex subunit 14.
      
 0.779
mrpl35
Mitochondrial ribosomal protein L35.
      
 0.674
mrps11
Mitochondrial ribosomal protein S11.
      
 0.665
mtrf1
Mitochondrial translation release factor 1.
      
 0.574
LOC115014002
PDZ and LIM domain protein 2-like.
      
 0.559
tmem160
Transmembrane protein 160.
      
 0.556
ENSCGOP00000050491
Ring finger protein 182.
      
 0.540
rpa3
Replication protein A3.
      
 0.522
gcc1
GRIP and coiled-coil domain containing 1.
      
 0.491
psat1
Phosphoserine aminotransferase 1.
      
 0.485
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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