bgn protein (Cottoperca gobio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

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Textmining

[Homology]

Score

bgn

Biglycan. (372 aa)

Predicted Functional Partners:

csgalnact2

0.754

lum

0.743

prelp

0.723

LOC115008122

0.719

LOC115011315

0.719

bdnf

0.712

fgg

0.708

LOC115008534

0.689

LOC115011161

0.687

lrr1

0.684

Your Current Organism:

Cottoperca gobio

NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC115008122	LOC115008534	ENSCGOP00000015606	ENSCGOP00000036530	Mimecan-like.	Fibromodulin-like.	0.712
LOC115008122	LOC115011161	ENSCGOP00000015606	ENSCGOP00000015312	Mimecan-like.	Fibromodulin-like.	0.712
LOC115008122	bgn	ENSCGOP00000015606	ENSCGOP00000009268	Mimecan-like.	Biglycan.	0.719
LOC115008122	lum	ENSCGOP00000015606	ENSCGOP00000043548	Mimecan-like.	Lumican.	0.826
LOC115008122	prelp	ENSCGOP00000015606	ENSCGOP00000036459	Mimecan-like.	Proline and arginine rich end leucine rich repeat protein.	0.704
LOC115008534	LOC115008122	ENSCGOP00000036530	ENSCGOP00000015606	Fibromodulin-like.	Mimecan-like.	0.712
LOC115008534	LOC115011161	ENSCGOP00000036530	ENSCGOP00000015312	Fibromodulin-like.	Fibromodulin-like.	0.903
LOC115008534	LOC115011315	ENSCGOP00000036530	ENSCGOP00000027776	Fibromodulin-like.	Mimecan-like.	0.712
LOC115008534	bgn	ENSCGOP00000036530	ENSCGOP00000009268	Fibromodulin-like.	Biglycan.	0.689
LOC115008534	lrr1	ENSCGOP00000036530	ENSCGOP00000008617	Fibromodulin-like.	Leucine rich repeat protein 1.	0.746
LOC115008534	lum	ENSCGOP00000036530	ENSCGOP00000043548	Fibromodulin-like.	Lumican.	0.703
LOC115008534	prelp	ENSCGOP00000036530	ENSCGOP00000036459	Fibromodulin-like.	Proline and arginine rich end leucine rich repeat protein.	0.682
LOC115011161	LOC115008122	ENSCGOP00000015312	ENSCGOP00000015606	Fibromodulin-like.	Mimecan-like.	0.712
LOC115011161	LOC115008534	ENSCGOP00000015312	ENSCGOP00000036530	Fibromodulin-like.	Fibromodulin-like.	0.903
LOC115011161	LOC115011315	ENSCGOP00000015312	ENSCGOP00000027776	Fibromodulin-like.	Mimecan-like.	0.712
LOC115011161	bgn	ENSCGOP00000015312	ENSCGOP00000009268	Fibromodulin-like.	Biglycan.	0.687
LOC115011161	lrr1	ENSCGOP00000015312	ENSCGOP00000008617	Fibromodulin-like.	Leucine rich repeat protein 1.	0.697
LOC115011161	lum	ENSCGOP00000015312	ENSCGOP00000043548	Fibromodulin-like.	Lumican.	0.703
LOC115011161	prelp	ENSCGOP00000015312	ENSCGOP00000036459	Fibromodulin-like.	Proline and arginine rich end leucine rich repeat protein.	0.682
LOC115011315	LOC115008534	ENSCGOP00000027776	ENSCGOP00000036530	Mimecan-like.	Fibromodulin-like.	0.712