STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccz1CCZ1 homolog, vacuolar protein trafficking and biogenesis associated. (486 aa)    
Predicted Functional Partners:
vps41
VPS41 subunit of HOPS complex.
  
 
 
 0.982
vps39
VPS39 subunit of HOPS complex.
    
 
 0.981
vps16
VPS16 core subunit of CORVET and HOPS complexes.
    
 
 0.981
vps11
VPS11 core subunit of CORVET and HOPS complexes.
    
 
 0.981
vps18
VPS18 core subunit of CORVET and HOPS complexes.
    
 
 0.981
mon1a
MON1 homolog A, secretory trafficking associated.
    
 0.972
LOC115007972
Vacuolar fusion protein MON1 homolog B-like.
    
 0.972
ENSCGOP00000000792
GRIP1 associated protein 1.
    
 0.971
LOC115007835
Ras-related protein rab7.
    
 0.956
LOC115008553
Ras-related protein rab7-like.
    
 0.956
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.