Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rab25RAB25, member RAS oncogene family. (208 aa)    
Predicted Functional Partners:
ENSCGOP00000015752
annotation not available
    
 
 0.915
exoc2
Exocyst complex component 2.
    
 0.830
rab3il1
RAB3A interacting protein like 1.
    
 0.792
ENSCGOP00000010145
RAB3A interacting protein (rabin3).
    
 0.792
LOC115019048
Rab proteins geranylgeranyltransferase component A 2-like.
    
 0.780
LOC115012352
Rab11 family-interacting protein 4A-like.
    
 0.773
rab11fip3
RAB11 family interacting protein 3.
    
 0.773
LOC115008284
Rab11 family-interacting protein 4B-like.
    
 0.773
rabggtb
Rab geranylgeranyltransferase subunit beta.
    
 0.724
exoc7
Exocyst complex component 7.
    
 0.707
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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