Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tcf7Transcription factor 7. (493 aa)    
Predicted Functional Partners:
ctnnb1
Catenin beta 1.
    
 0.999
nlk
Nemo like kinase.
    
 0.994
LOC115015554
Catenin beta-1-like.
    
 0.982
LOC115025440
Transcription factor Sox-17-alpha-like.
    
0.960
ruvbl1
RuvB like AAA ATPase 1.
    
  0.957
smad4
SMAD family member 4.
    
 0.940
LOC115017230
Mothers against decapentaplegic homolog 4-like.
    
 0.940
LOC115015442
Mothers against decapentaplegic homolog 4-like.
    
 0.940
lef1
Lymphoid enhancer binding factor 1.
   
0.934
LOC115013232
Transducin-like enhancer protein 4.
    
 0.907
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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