Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
atoh7Atonal bHLH transcription factor 7. (143 aa)    
Predicted Functional Partners:
pou4f2
POU class 4 homeobox 2.
    
 
 0.795
VSX2
Visual system homeobox 2.
      
 0.757
kif11
Kinesin family member 11.
    
 
 0.702
LOC115003464
Visual system homeobox 2-like.
      
 0.684
foxn4
Forkhead box N4.
      
 0.679
gap43
Growth associated protein 43.
      
 0.656
zpr1
ZPR1 zinc finger.
      
 0.645
pou4f3
POU class 4 homeobox 3.
    
 
 0.635
pax6
Paired box 6.
    
 
 0.611
LOC115009273
Paired box protein Pax-6-like.
    
 
 0.611
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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