Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
rnf11Ring finger protein 11. (154 aa)    
Predicted Functional Partners:
LOC115008135
E3 ubiquitin-protein ligase Itchy-like.
    
 
 0.904
LOC115010823
E3 ubiquitin-protein ligase Itchy-like.
    
 
 0.904
LOC115020879
Tax1-binding protein 1 homolog B-like.
   
 
 0.893
tnfaip3
TNF alpha induced protein 3.
   
 
 0.892
rps27a
Ribosomal protein S27a.
    
 0.890
LOC115028278
Ubiquitin-conjugating enzyme E2 N-like.
   
 0.881
ube2n
Ubiquitin conjugating enzyme E2 N.
   
 0.881
nedd4l
NEDD4 like E3 ubiquitin protein ligase.
    
 
 0.798
nedd4
NEDD4 E3 ubiquitin protein ligase.
    
 
 0.798
smurf1
SMAD specific E3 ubiquitin protein ligase 1.
    
 
 0.791
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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