Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115016245Protein FAM8A1-like. (310 aa)    
Predicted Functional Partners:
sel1l
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
    
 
 0.954
amfr
Autocrine motility factor receptor.
    
 
 0.812
LOC115014280
E3 ubiquitin-protein ligase synoviolin-like.
    
 
 0.812
pithd1
PITH domain containing 1.
      
 0.718
os9
OS9 endoplasmic reticulum lectin.
    
 
 0.717
erlec1
Endoplasmic reticulum lectin 1.
    
 
 0.717
LOC115025100
Protein FRA10AC1.
      
 0.682
fam136a
Family with sequence similarity 136 member A.
      
 0.672
ENSCGOP00000000744
annotation not available
    
 
 0.583
cgrrf1
Cell growth regulator with ring finger domain 1.
      
 0.581
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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