Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
spdyaspeedy/RINGO cell cycle regulator family member A. (325 aa)    
Predicted Functional Partners:
cdk1
Cyclin dependent kinase 1.
    
 0.910
cdk2
Cyclin dependent kinase 2.
    
 0.910
ghdc
GH3 domain containing.
      
 0.846
appl2
Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2.
    
 
 0.841
LOC115028971
Unconventional myosin-VI-like.
    
 
 0.552
LOC115027361
Unconventional myosin-VI-like.
    
 
 0.552
hspb11
Heat shock protein family B (small) member 11.
      
 0.530
syce3
Synaptonemal complex central element protein 3.
      
 0.469
bub1b
BUB1 mitotic checkpoint serine/threonine kinase B.
      
 0.444
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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