Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC11502871740S ribosomal protein S17-like. (135 aa)    
Predicted Functional Partners:
rps24
Ribosomal protein S24.
   
 0.998
rps5
Ribosomal protein S5.
   
 0.998
rps16
Ribosomal protein S16.
  
 0.998
rps25
Ribosomal protein S25.
   
 0.998
rps15
Ribosomal protein S15.
   
 0.998
LOC115011839
40S ribosomal protein SA.
  
 0.998
rps7
Ribosomal protein S7.
   
 0.998
LOC115022740
40S ribosomal protein S28.
   
 0.998
fau
FAU ubiquitin like and ribosomal protein S30 fusion.
   
 0.998
LOC115022134
40S ribosomal protein S8.
   
 0.998
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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