Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cd2bp2CD2 cytoplasmic tail binding protein 2. (384 aa)    
Predicted Functional Partners:
prpf8
pre-mRNA processing factor 8.
    
 0.993
ddx23
DEAD-box helicase 23.
   
 
 0.992
txnl4a
Thioredoxin like 4A.
   
 0.991
eftud2
Elongation factor Tu GTP binding domain containing 2.
    
 
 0.988
snrnp40
Small nuclear ribonucleoprotein U5 subunit 40.
   
 0.986
snrnp200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 
 0.984
ENSCGOP00000001030
annotation not available
    
 
 0.981
prpf6
pre-mRNA processing factor 6.
   
 
 0.981
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
 
 0.980
snrpd1
Small nuclear ribonucleoprotein D1 polypeptide.
    
 
 0.978
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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