ptprz1 protein (Cottoperca gobio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ptprz1

Protein tyrosine phosphatase receptor type Z1. (1782 aa)

Predicted Functional Partners:

ptn

0.935

LOC115015998

0.918

ENSCGOP00000023892

0.793

LOC115023015

0.793

ncan

0.793

ENSCGOP00000022624

0.790

LOC115013416

0.776

LOC115016930

0.776

ENSCGOP00000045709

0.776

cdc25b

0.739

Your Current Organism:

Cottoperca gobio

NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCGOP00000022624	ptprz1	ENSCGOP00000022624	ENSCGOP00000010425	Interleukin 34.	Protein tyrosine phosphatase receptor type Z1.	0.790
ENSCGOP00000023892	ENSCGOP00000045709	ENSCGOP00000023892	ENSCGOP00000045709	Versican a.	annotation not available	0.484
ENSCGOP00000023892	LOC115013416	ENSCGOP00000023892	ENSCGOP00000012631	Versican a.	Tenascin-like.	0.484
ENSCGOP00000023892	LOC115015998	ENSCGOP00000023892	ENSCGOP00000006257	Versican a.	Brevican core protein-like.	0.868
ENSCGOP00000023892	LOC115016930	ENSCGOP00000023892	ENSCGOP00000045646	Versican a.	Tenascin-like.	0.484
ENSCGOP00000023892	ptprz1	ENSCGOP00000023892	ENSCGOP00000010425	Versican a.	Protein tyrosine phosphatase receptor type Z1.	0.793
ENSCGOP00000045709	ENSCGOP00000023892	ENSCGOP00000045709	ENSCGOP00000023892	annotation not available	Versican a.	0.484
ENSCGOP00000045709	LOC115013416	ENSCGOP00000045709	ENSCGOP00000012631	annotation not available	Tenascin-like.	0.515
ENSCGOP00000045709	LOC115015998	ENSCGOP00000045709	ENSCGOP00000006257	annotation not available	Brevican core protein-like.	0.821
ENSCGOP00000045709	LOC115016930	ENSCGOP00000045709	ENSCGOP00000045646	annotation not available	Tenascin-like.	0.515
ENSCGOP00000045709	LOC115023015	ENSCGOP00000045709	ENSCGOP00000024245	annotation not available	Neurocan core protein-like.	0.484
ENSCGOP00000045709	ncan	ENSCGOP00000045709	ENSCGOP00000024573	annotation not available	Neurocan.	0.484
ENSCGOP00000045709	ptprz1	ENSCGOP00000045709	ENSCGOP00000010425	annotation not available	Protein tyrosine phosphatase receptor type Z1.	0.776
LOC115013416	ENSCGOP00000023892	ENSCGOP00000012631	ENSCGOP00000023892	Tenascin-like.	Versican a.	0.484
LOC115013416	ENSCGOP00000045709	ENSCGOP00000012631	ENSCGOP00000045709	Tenascin-like.	annotation not available	0.515
LOC115013416	LOC115015998	ENSCGOP00000012631	ENSCGOP00000006257	Tenascin-like.	Brevican core protein-like.	0.821
LOC115013416	LOC115016930	ENSCGOP00000012631	ENSCGOP00000045646	Tenascin-like.	Tenascin-like.	0.515
LOC115013416	LOC115023015	ENSCGOP00000012631	ENSCGOP00000024245	Tenascin-like.	Neurocan core protein-like.	0.484
LOC115013416	ncan	ENSCGOP00000012631	ENSCGOP00000024573	Tenascin-like.	Neurocan.	0.484
LOC115013416	ptprz1	ENSCGOP00000012631	ENSCGOP00000010425	Tenascin-like.	Protein tyrosine phosphatase receptor type Z1.	0.776