Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prdm12PR/SET domain 12. (380 aa)    
Predicted Functional Partners:
phox2b
Paired like homeobox 2B.
      
 0.580
ENSCGOP00000003328
annotation not available
      
 0.554
ENSCGOP00000022817
annotation not available
    
 0.521
STK32A
Serine/threonine-protein kinase 32A-like.
      
 0.513
p2rx3
Purinergic receptor P2X 3.
      
 0.480
LOC115014683
P2X purinoceptor 3-like.
      
 0.480
ENSCGOP00000047787
MCF.2 cell line derived transforming sequence a.
      
 0.467
ripk4
Receptor interacting serine/threonine kinase 4.
    
 0.463
fancm
FA complementation group M.
    
   0.447
tmc3
Transmembrane channel like 3.
   
 0.430
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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