ENSCGOP00000010462 protein (Cottoperca gobio)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene co-occurrence

gene fusions

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[Homology]

Score

ENSCGOP00000010462

annotation not available (120 aa)

Predicted Functional Partners:

fancm

0.721

lin54

0.493

lin52

0.493

lin9

0.458

med14

0.434

med23

0.430

cenpn

0.427

med17

0.421

CENPS

0.420

wscd2

0.420

Your Current Organism:

Cottoperca gobio

NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CENPS	ENSCGOP00000010462	ENSCGOP00000002395	ENSCGOP00000010462	Centromere protein S-like.	annotation not available	0.420
CENPS	cenpn	ENSCGOP00000002395	ENSCGOP00000046220	Centromere protein S-like.	Centromere protein N.	0.909
CENPS	fancm	ENSCGOP00000002395	ENSCGOP00000038422	Centromere protein S-like.	FA complementation group M.	0.997
ENSCGOP00000010462	CENPS	ENSCGOP00000010462	ENSCGOP00000002395	annotation not available	Centromere protein S-like.	0.420
ENSCGOP00000010462	cenpn	ENSCGOP00000010462	ENSCGOP00000046220	annotation not available	Centromere protein N.	0.427
ENSCGOP00000010462	fancm	ENSCGOP00000010462	ENSCGOP00000038422	annotation not available	FA complementation group M.	0.721
ENSCGOP00000010462	lin52	ENSCGOP00000010462	ENSCGOP00000036673	annotation not available	Lin-52 DREAM MuvB core complex component.	0.493
ENSCGOP00000010462	lin54	ENSCGOP00000010462	ENSCGOP00000033533	annotation not available	Lin-54 DREAM MuvB core complex component.	0.493
ENSCGOP00000010462	lin9	ENSCGOP00000010462	ENSCGOP00000037989	annotation not available	Lin-9 DREAM MuvB core complex component.	0.458
ENSCGOP00000010462	med14	ENSCGOP00000010462	ENSCGOP00000024568	annotation not available	Mediator complex subunit 14.	0.434
ENSCGOP00000010462	med17	ENSCGOP00000010462	ENSCGOP00000013101	annotation not available	Mediator complex subunit 17.	0.421
ENSCGOP00000010462	med23	ENSCGOP00000010462	ENSCGOP00000035325	annotation not available	Mediator complex subunit 23.	0.430
ENSCGOP00000010462	wscd2	ENSCGOP00000010462	ENSCGOP00000011989	annotation not available	WSC domain containing 2.	0.420
cenpn	CENPS	ENSCGOP00000046220	ENSCGOP00000002395	Centromere protein N.	Centromere protein S-like.	0.909
cenpn	ENSCGOP00000010462	ENSCGOP00000046220	ENSCGOP00000010462	Centromere protein N.	annotation not available	0.427
cenpn	wscd2	ENSCGOP00000046220	ENSCGOP00000011989	Centromere protein N.	WSC domain containing 2.	0.679
fancm	CENPS	ENSCGOP00000038422	ENSCGOP00000002395	FA complementation group M.	Centromere protein S-like.	0.997
fancm	ENSCGOP00000010462	ENSCGOP00000038422	ENSCGOP00000010462	FA complementation group M.	annotation not available	0.721
fancm	wscd2	ENSCGOP00000038422	ENSCGOP00000011989	FA complementation group M.	WSC domain containing 2.	0.971
lin52	ENSCGOP00000010462	ENSCGOP00000036673	ENSCGOP00000010462	Lin-52 DREAM MuvB core complex component.	annotation not available	0.493