Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fbxw5F-box and WD repeat domain containing 5. (586 aa)    
Predicted Functional Partners:
ddb1
Damage specific DNA binding protein 1.
    
 
 0.980
skp1
S-phase kinase associated protein 1.
    
 0.977
rbx1
Ring-box 1.
    
 0.973
LOC115012104
Protein transport protein Sec23B.
    
 
 0.921
cul4b
Cullin 4B.
    
 0.918
cul4a
Cullin 4A.
    
 0.918
tsc2
TSC complex subunit 2.
    
 
 0.908
rnf7
Ring finger protein 7.
    
 0.897
pomp
Proteasome maturation protein.
      
 0.882
LOC115018021
Cullin-3.
    
 0.880
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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