Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
armc5Armadillo repeat containing 5. (1087 aa)    
Predicted Functional Partners:
ccz1
CCZ1 homolog, vacuolar protein trafficking and biogenesis associated.
    
 0.897
vps16
VPS16 core subunit of CORVET and HOPS complexes.
    
 
 0.817
vps11
VPS11 core subunit of CORVET and HOPS complexes.
    
 
 0.816
vps41
VPS41 subunit of HOPS complex.
    
 
 0.816
vps18
VPS18 core subunit of CORVET and HOPS complexes.
    
 
 0.816
LOC115010804
Rab GDP dissociation inhibitor alpha.
   
 0.806
LOC115028490
Rab GDP dissociation inhibitor beta-like.
   
 0.806
LOC115007694
Rab GDP dissociation inhibitor beta-like.
   
 0.806
ENSCGOP00000000792
GRIP1 associated protein 1.
    
 0.804
mon1a
MON1 homolog A, secretory trafficking associated.
    
 0.804
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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