Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115014033Protein NipSnap homolog 1-like. (275 aa)    
Predicted Functional Partners:
mthfsd
Methenyltetrahydrofolate synthetase domain containing.
   
    0.824
smim12
Small integral membrane protein 12.
   
    0.812
sqstm1
Sequestosome 1.
    
 
 0.810
snu13
Small nuclear ribonucleoprotein 13.
   
  
 0.738
LOC115012135
Next to BRCA1 gene 1 protein-like.
    
 
 0.731
LOC115024407
Next to BRCA1 gene 1 protein-like.
    
 
 0.731
OSBPL10
Oxysterol binding protein like 10.
   
  0.716
osbpl11
Oxysterol binding protein like 11.
   
  0.716
ENSCGOP00000027900
annotation not available
   
  0.716
ENSCGOP00000026940
WD repeat domain 6.
   
    0.700
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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