Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ltbp1Latent transforming growth factor beta binding protein 1. (1341 aa)    
Predicted Functional Partners:
LOC115017895
Transforming growth factor beta-1 proprotein-like.
    
 0.993
LOC115003471
Transforming growth factor beta-3 proprotein-like.
   
 0.972
tgfb3
Transforming growth factor beta 3.
   
 0.972
LOC115014648
Transforming growth factor beta-2 proprotein-like.
    
 0.967
tgfb2
Transforming growth factor beta 2.
    
 0.967
LOC115003467
Thrombospondin-1-like.
   
 
 0.925
thbs1
Thrombospondin 1.
   
 
 0.925
ENSCGOP00000024304
Collagen, type VI, alpha 1.
   
 0.624
prrx1
Paired related homeobox 1.
    
 
 0.617
TIMP3
Metalloproteinase inhibitor 3-like.
     
 0.570
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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