Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115008524Protein FAM219A-like. (199 aa)    
Predicted Functional Partners:
dctn3
Dynactin subunit 3.
      
 0.737
znf511
Zinc finger protein 511.
      
 0.687
lrrc2
Leucine rich repeat containing 2.
      
 0.665
fam118b
Family with sequence similarity 118 member B.
      
 0.662
ENSCGOP00000055285
annotation not available
      
 0.659
sigmar1
Sigma non-opioid intracellular receptor 1.
      
 0.645
wdr83os
WD repeat domain 83 opposite strand.
      
 0.641
rint1
RAD50 interactor 1.
      
 0.641
ENSCGOP00000049817
annotation not available
      
 0.575
mre11
MRE11 homolog, double strand break repair nuclease.
    
 
 0.572
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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