Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115010964Lipopolysaccharide-binding protein-like. (469 aa)    
Predicted Functional Partners:
LOC115021497
Apolipoprotein A-I-like.
    
 0.518
LOC115018293
Apolipoprotein A-I-like.
    
 0.518
LOC115021499
Apolipoprotein A-IV-like.
    
 0.518
tmf1
TATA element modulatory factor 1.
     
 0.498
ENSCGOP00000049893
Haptoglobin.
     
 0.497
arl1
ADP ribosylation factor like GTPase 1.
     
  0.486
LOC115023718
Liver-expressed antimicrobial peptide 2-like.
      
 0.486
LOC115018743
ADP-ribosylation factor-like protein 13B.
     
 0.461
arfrp1
ADP ribosylation factor related protein 1.
     
 0.461
arl13a
ADP ribosylation factor like GTPase 13A.
     
 0.461
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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