Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gapvd1GTPase activating protein and VPS9 domains 1. (1474 aa)    
Predicted Functional Partners:
snx24
Sorting nexin 24.
    
 
 0.962
csnk1a1
Casein kinase 1 alpha 1.
    
   0.906
tbc1d8b
TBC1 domain family member 8B.
   
 
 0.858
rabep2
Rabaptin, RAB GTPase binding effector protein 2.
    
 0.847
LOC115026716
Ras-related protein Rab-5B-like.
    
 0.832
rab5a
RAB5A, member RAS oncogene family.
    
 0.832
LOC115024996
Ras-related protein Rab-5C-like.
    
 0.832
rab5c
RAB5C, member RAS oncogene family.
    
 0.832
RAB17
Ras-related protein Rab-17-like.
    
 0.832
LOC115016257
Ras-related protein Rab-5A.
    
 0.832
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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