Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115019295Barrier-to-autointegration factor. (90 aa)    
Predicted Functional Partners:
lemd3
LEM domain containing 3.
    
 0.943
LOC115019852
Serine/threonine-protein kinase VRK1-like.
    
 0.921
LOC115027759
Serine/threonine-protein kinase VRK1-like.
    
 0.921
tmpo
Thymopoietin.
    
 0.906
rbm39
RNA binding motif protein 39.
    
 0.891
lmnb2
Lamin B2.
    
 0.869
ankle2
Ankyrin repeat and LEM domain containing 2.
    
 0.867
lmna
Lamin A/C.
    
 0.861
LOC115015570
lamin-A-like.
    
 0.861
lmnb1
Lamin B1.
    
 0.861
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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