Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115014015Survival motor neuron protein 1-like. (285 aa)    
Predicted Functional Partners:
ddx20
DEAD-box helicase 20.
    
 0.996
gemin5
Gem nuclear organelle associated protein 5.
   
 0.996
ENSCGOP00000046834
Gem (nuclear organelle) associated protein 8.
    
 0.994
ENSCGOP00000018691
Gem (nuclear organelle) associated protein 7.
    
 0.993
gemin2
Gem nuclear organelle associated protein 2.
    
 0.991
gemin4
Gem nuclear organelle associated protein 4.
    
 0.990
snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
 0.984
snrpd1
Small nuclear ribonucleoprotein D1 polypeptide.
   
 0.984
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
   
 0.981
snrpg
Small nuclear ribonucleoprotein polypeptide G.
   
 0.980
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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