Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nop58NOP58 ribonucleoprotein. (488 aa)    
Predicted Functional Partners:
snu13
Small nuclear ribonucleoprotein 13.
   
 0.999
rrp9
Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.
   
 0.999
nop56
NOP56 ribonucleoprotein.
  
0.999
dkc1
Dyskerin pseudouridine synthase 1.
  
 0.999
nhp2
NHP2 ribonucleoprotein.
   
 0.997
wdr43
WD repeat domain 43.
   
 0.997
ENSCGOP00000023250
annotation not available
   
 0.997
wdr75
WD repeat domain 75.
   
 0.997
ftsj3
FtsJ RNA 2'-O-methyltransferase 3.
  
 0.997
utp4
UTP4 small subunit processome component.
   
 0.996
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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