Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccdc102aCoiled-coil domain containing 102A. (621 aa)    
Predicted Functional Partners:
tmem129
Transmembrane protein 129.
      
 0.808
cdc42ep4
CDC42 effector protein 4.
      
 0.773
ktn1
Kinectin 1.
      
 0.747
bms1
BMS1 ribosome biogenesis factor.
      
 0.727
ccdc32
Coiled-coil domain containing 32.
      
 0.703
ENSCGOP00000033275
Carbohydrate (chondroitin 4) sulfotransferase 11.
      
 0.692
LOC115004015
Bromo adjacent homology domain-containing 1 protein-like.
      
 0.656
bahd1
Bromo adjacent homology domain containing 1.
      
 0.656
heg1
Heart development protein with EGF like domains 1.
      
 0.607
LOC115013166
Intracellular hyaluronan-binding protein 4-like.
      
 0.585
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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