Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dnai1Dynein axonemal intermediate chain 1. (674 aa)    
Predicted Functional Partners:
LOC115007057
Radial spoke head protein 4 homolog A-like.
   
 
 0.987
rsph9
Radial spoke head component 9.
   
 
 0.981
dnali1
Dynein axonemal light intermediate chain 1.
  
 
 0.981
cfap52
Cilia and flagella associated protein 52.
   
 0.978
ccdc65
Coiled-coil domain containing 65.
   
 0.965
rsph3
Radial spoke head 3.
  
 
 0.965
LOC115026096
Thioredoxin domain-containing protein 3 homolog.
   
 
 0.963
ENSCGOP00000049876
annotation not available
   
 0.962
tekt2
Tektin 2.
   
 
 0.961
ccdc40
Coiled-coil domain containing 40.
   
 
 0.958
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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