Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC115024184Histone H3.3. (136 aa)    
Predicted Functional Partners:
ENSCGOP00000009600
Lysine (K)-specific demethylase 6B, a.
   
 0.875
LOC115016978
Histone demethylase UTY-like.
   
 0.875
ENSCGOP00000056442
Lysine (K)-specific demethylase 6B, b.
   
 0.875
kdm6a
Lysine demethylase 6A.
   
 0.875
ENSCGOP00000028923
annotation not available
    
 0.847
setd2
SET domain containing 2, histone lysine methyltransferase.
    
 0.847
rps27a
Ribosomal protein S27a.
   
 0.844
EZH1
Enhancer of zeste 1 polycomb repressive complex 2 subunit.
    
 0.835
dot1l
DOT1 like histone lysine methyltransferase.
   
 0.825
suv39h1
Suppressor of variegation 3-9 homolog 1.
    
 0.815
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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