Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dffbDNA fragmentation factor subunit beta. (322 aa)    
Predicted Functional Partners:
dffa
DNA fragmentation factor subunit alpha.
    
 0.953
magoh
Mago homolog, exon junction complex subunit.
    
   0.894
casp6
Caspase 6.
    
 0.848
cflar
CASP8 and FADD like apoptosis regulator.
    
 0.826
ENSCGOP00000011451
H1.0 linker histone.
    
 0.819
LOC115014671
Centromere protein U-like.
    
 0.789
CASP3
Caspase-3-like.
    
 0.789
casp7
Caspase 7.
    
 0.789
LOC115016952
Caspase-3-like.
    
 0.789
casp3
Caspase 3.
    
 0.789
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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