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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115008611Nicotinamide phosphoribosyltransferase-like. (493 aa)    
Predicted Functional Partners:
mrpl27
Mitochondrial ribosomal protein L27.
  
 
 0.929
hemk1
HemK methyltransferase family member 1.
  
 
 0.925
LOC115018804
Methyltransferase N6AMT1-like.
  
 
 0.925
LOC115018619
Methyltransferase N6AMT1-like.
  
 
 0.925
mrpl9
Mitochondrial ribosomal protein L9.
   
 
 0.922
mrpl20
Mitochondrial ribosomal protein L20.
  
 
 0.920
mrpl17
Mitochondrial ribosomal protein L17.
  
 
 0.920
LOC115021222
28S ribosomal protein S12, mitochondrial-like.
  
 
 0.919
mrpl32
Mitochondrial ribosomal protein L32.
  
 
 0.918
mrps16
Mitochondrial ribosomal protein S16.
  
 
 0.917
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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