Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115022907Matrix metalloproteinase-14-like. (621 aa)    
Predicted Functional Partners:
LOC115012585
Metalloproteinase inhibitor 2-like.
    
 0.963
timp2
TIMP metallopeptidase inhibitor 2.
    
 0.961
mmp2
Matrix metallopeptidase 2.
   
0.961
LOC115023741
Matrix metalloproteinase-14-like.
  
  
 
0.901
LOC115004588
Furin-1-like.
    
 0.890
furin
Furin, paired basic amino acid cleaving enzyme.
    
 0.890
LOC115007517
Insulin-like growth factor-binding protein 1.
    
 0.880
myog
Myogenin.
    
 
 0.851
TIMP3
Metalloproteinase inhibitor 3-like.
   
 0.811
rpl13
Ribosomal protein L13.
      
 0.774
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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