Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fen1Flap structure-specific endonuclease 1. (392 aa)    
Predicted Functional Partners:
pcna
Proliferating cell nuclear antigen.
  
 0.997
pold1
DNA polymerase delta 1, catalytic subunit.
  
 0.984
lig1
DNA ligase 1.
  
 0.980
rad50
RAD50 double strand break repair protein.
  
 0.977
mre11
MRE11 homolog, double strand break repair nuclease.
  
 0.961
rfc3
Replication factor C subunit 3.
   
 0.961
rad52
RAD52 homolog, DNA repair protein.
   
 0.960
msh6
mutS homolog 6.
   
 0.957
rfc4
Replication factor C subunit 4.
   
 0.952
pold2
DNA polymerase delta 2, accessory subunit.
  
 0.949
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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