Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
dnase2Deoxyribonuclease 2, lysosomal. (399 aa)    
Predicted Functional Partners:
LOC115022593
Cathepsin Z-like.
   
 
 0.759
ctsz
Cathepsin Z.
   
 
 0.759
gns
Glucosamine (N-acetyl)-6-sulfatase.
   
 0.715
LOC115016478
N-acetylglucosamine-6-sulfatase-like.
   
 0.715
bloc1s1
Biogenesis of lysosomal organelles complex 1 subunit 1.
   
 
  0.667
vamp8
Vesicle associated membrane protein 8.
     
 0.646
m6pr
Mannose-6-phosphate receptor, cation dependent.
     
  0.637
dnajb11
DnaJ heat shock protein family (Hsp40) member B11.
    
   0.612
txndc5
Thioredoxin domain containing 5.
     
  0.601
LOC115017304
Ribonucleoside-diphosphate reductase large subunit.
    
   0.586
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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