Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
usp49Ubiquitin specific peptidase 49. (724 aa)    
Predicted Functional Partners:
tada3
Transcriptional adaptor 3.
    
 0.888
LOC115018572
Transcription initiation factor TFIID subunit 9-like.
    
 0.888
taf10
TATA-box binding protein associated factor 10.
    
 0.887
trrap
Transformation/transcription domain associated protein.
    
 0.881
rps27a
Ribosomal protein S27a.
    
 0.862
sgf29
SAGA complex associated factor 29.
   
 0.823
taf12
TATA-box binding protein associated factor 12.
    
 0.818
tada2b
Transcriptional adaptor 2B.
    
 0.816
tada2a
Transcriptional adaptor 2A.
    
 0.816
ENSCGOP00000001309
annotation not available
    
 0.785
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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