Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tsr3TSR3 ribosome maturation factor. (284 aa)    
Predicted Functional Partners:
dtwd1
DTW domain containing 1.
      
 0.846
cmya5
Cardiomyopathy associated 5.
      
 0.846
tsr1
TSR1 ribosome maturation factor.
   
  
 0.844
bud23
BUD23 rRNA methyltransferase and ribosome maturation factor.
   
  
 0.804
dpy19l3
Dpy-19 like C-mannosyltransferase 3.
      
 0.764
pofut2
Protein O-fucosyltransferase 2.
      
 0.748
dus2
Dihydrouridine synthase 2.
   
  
 0.741
ebpl
EBP like.
      
 0.728
dpy19l1
Dpy-19 like C-mannosyltransferase 1.
      
 0.726
pofut1
Protein O-fucosyltransferase 1.
      
 0.726
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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