Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PRRT1Proline rich transmembrane protein 1. (92 aa)    
Predicted Functional Partners:
cnih2
Cornichon family AMPA receptor auxiliary protein 2.
    
 
 0.835
ENSCGOP00000015942
annotation not available
    
 
 0.835
gria2
Glutamate ionotropic receptor AMPA type subunit 2.
    
 
 0.697
LOC115014292
Glutamate receptor 2-like.
    
 
 0.697
LOC115009337
Proline-rich transmembrane protein 4-like.
    
 
 0.670
prrt4
Proline rich transmembrane protein 4.
    
 
 0.670
LOC115015593
Voltage-dependent calcium channel gamma-4 subunit-like.
    
 0.652
LOC115021786
Voltage-dependent calcium channel gamma-4 subunit-like.
    
 0.652
skiv2l
Ski2 like RNA helicase.
      
 0.632
CACNG2
Calcium voltage-gated channel auxiliary subunit gamma 2.
    
 
 0.591
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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