Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
frmd8FERM domain containing 8. (472 aa)    
Predicted Functional Partners:
itgb1bp1
Integrin subunit beta 1 binding protein 1.
    
 
 0.835
znrd2
Zinc ribbon domain containing 2.
      
 0.738
ccdc60
Coiled-coil domain containing 60.
      
 0.680
fam89b
Family with sequence similarity 89 member B.
      
 0.672
SLC25A45
Solute carrier family 25 member 45.
      
 0.655
ubox5
U-box domain containing 5.
      
 0.648
LOC115025832
Talin-2.
    
 
 0.582
tln2
Talin 2.
    
 
 0.582
LOC115022066
Vesicle-trafficking protein SEC22b-like.
      
 0.581
LOC115007493
Vesicle-trafficking protein SEC22b-B-like.
      
 0.581
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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