Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ELOF1Transcription elongation factor 1 homolog. (94 aa)    
Predicted Functional Partners:
supt5h
SPT5 homolog, DSIF elongation factor subunit.
    
 
 0.935
uvssa
UV stimulated scaffold protein A.
    
 
 0.910
polr2i
RNA polymerase II subunit I.
   
   0.892
polr2k
RNA polymerase II subunit K.
   
   0.888
supt4h1
SPT4 homolog, DSIF elongation factor subunit.
   
 
 0.885
POLR2E
RNA polymerase II subunit E.
  
   0.883
polr2l
RNA polymerase II subunit L.
    
   0.882
polr2g
RNA polymerase II subunit G.
    
   0.882
ercc8
ERCC excision repair 8, CSA ubiquitin ligase complex subunit.
    
 
 0.878
polr2h
RNA polymerase II subunit H.
    
   0.877
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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