Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
vdac1Voltage dependent anion channel 1. (313 aa)    
Predicted Functional Partners:
LOC115015039
ADP/ATP translocase 3.
   
 0.991
LOC115018923
ADP/ATP translocase 2.
   
 0.991
LOC115020308
Voltage-dependent anion-selective channel protein 2-like.
  
 
0.980
LOC115013800
Voltage-dependent anion-selective channel protein 2-like.
  
 
0.980
VDAC2
Voltage-dependent anion-selective channel protein 2-like.
  
 
0.980
LOC115016430
Voltage-dependent anion-selective channel protein 2-like.
  
 
0.980
LOC115005371
E3 ubiquitin-protein ligase parkin-like.
    
 0.978
ENSCGOP00000037711
annotation not available
    
 0.978
sqstm1
Sequestosome 1.
   
 0.966
bax
BCL2 associated X, apoptosis regulator.
    
 
 0.957
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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