Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
znf653Zinc finger protein 653. (639 aa)    
Predicted Functional Partners:
dcaf6
DDB1 and CUL4 associated factor 6.
      
 0.706
ENSCGOP00000023821
annotation not available
    
 
 0.691
actl6a
Actin like 6A.
    
 0.679
zswim7
Zinc finger SWIM-type containing 7.
      
 0.672
LOC115024320
Ataxin-7-like protein 3.
    
 0.649
atxn7l3
Ataxin 7 like 3.
    
 0.649
ttll5
Tubulin tyrosine ligase like 5.
      
 0.642
LOC115021722
Histone-lysine N-methyltransferase SETDB1-B-like.
   
 0.630
crbn
Cereblon.
    
 
 0.618
nae1
NEDD8 activating enzyme E1 subunit 1.
     
 0.616
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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