Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nfyaNuclear transcription factor Y subunit alpha. (356 aa)    
Predicted Functional Partners:
nfyb
Nuclear transcription factor Y subunit beta.
   
 0.999
nfyc
Nuclear transcription factor Y subunit gamma.
    
 0.999
sp1
Sp1 transcription factor.
    
 0.974
chrac1
Chromatin accessibility complex subunit 1.
    
 0.959
ep300
E1A binding protein p300.
    
 0.920
LOC115024893
Histone acetyltransferase p300-like.
    
 0.920
ENSCGOP00000033386
General transcription factor IIA, 1.
    
   0.867
LOC115022565
Uncharacterized LOC115022565.
    
 0.857
LOC115019593
CREB-binding protein-like.
    
 0.814
LOC115011901
CREB-binding protein-like.
    
 0.814
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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