Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115012207Calcium-binding mitochondrial carrier protein SCaMC-3-like. (426 aa)    
Predicted Functional Partners:
ndufs7
NADH:ubiquinone oxidoreductase core subunit S7.
    
 0.862
LOC115023945
PWWP domain-containing DNA repair factor 3A-like.
    
 0.827
LOC115015835
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like.
    
 0.825
LOC115021381
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like.
    
 0.825
ndufs3
NADH:ubiquinone oxidoreductase core subunit S3.
   
 
 0.768
ndufs2
NADH:ubiquinone oxidoreductase core subunit S2.
   
 
 0.752
ndufa8
NADH:ubiquinone oxidoreductase subunit A8.
    
 
 0.746
ndufb7
NADH:ubiquinone oxidoreductase subunit B7.
    
 
 0.726
NDUFA13
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-like.
    
 
 0.712
ndufb10
NADH:ubiquinone oxidoreductase subunit B10.
    
 
 0.699
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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