Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mydgfMyeloid derived growth factor. (165 aa)    
Predicted Functional Partners:
ssr4
Signal sequence receptor subunit 4.
   
  
 0.785
cope
Coatomer protein complex subunit epsilon.
   
  
 0.761
txndc11
Thioredoxin domain containing 11.
   
  
 0.684
pdia6
Protein disulfide isomerase family A member 6.
   
  
 0.671
prkcsh
Protein kinase C substrate 80K-H.
   
   0.656
gnptg
N-acetylglucosamine-1-phosphate transferase subunit gamma.
   
   0.656
LOC115024065
Glucosidase 2 subunit beta-like.
   
   0.656
xbp1
X-box binding protein 1.
   
 
  0.609
ppib
Peptidylprolyl isomerase B.
   
   0.581
ENSCGOP00000042355
annotation not available
      
 0.559
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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